Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UYA_23740ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)    
Predicted Functional Partners:
UYA_23735
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.987
UYA_23745
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.981
UYA_23750
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.975
UYA_23760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.967
UYA_23765
Virulence factor SrfB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.967
UYA_23730
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.954
UYA_23770
Breakpoint cluster region protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.945
UYA_23720
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.906
UYA_23755
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.863
UYA_05810
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.693
Your Current Organism:
Pseudomonas alcaliphila
NCBI taxonomy Id: 741155
Other names: P. alcaliphila JAB1, Pseudomonas alcaliphila JAB1, Pseudomonas alcaliphila str. JAB1, Pseudomonas alcaliphila strain JAB1, Pseudomonas sp. JAB1
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