STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMF94_6912PUM-HD domain-containing protein. (1045 aa)    
Predicted Functional Partners:
BMF94_3587
Uncharacterized protein.
    
   0.989
BMF94_6257
Putative Poly(A)-specific ribonuclease.
    
 
 0.909
BMF94_5031
Uncharacterized protein.
    
 
 0.851
BMF94_0198
Uncharacterized protein.
    
 0.720
BMF94_5000
AD domain-containing protein.
    
   0.679
BMF94_2083
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.655
BMF94_5657
Uncharacterized protein.
    
  0.624
BMF94_5234
Endo/exonuclease/phosphatase domain-containing protein.
   
 
 0.609
BMF94_6059
Uncharacterized protein.
    
 
 0.608
BMF94_3470
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
  0.596
Your Current Organism:
Rhodotorula taiwanensis
NCBI taxonomy Id: 741276
Other names: A1-01, BCRC 23118, CBS 11729, R. taiwanensis, Rhodotorula sp. BCRC 23118, Rhodotorula taiwanensis Lee & Huang 2011
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