STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMF94_6484UBA_e1_C domain-containing protein. (1019 aa)    
Predicted Functional Partners:
BMF94_4118
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.997
BMF94_1162
Ubiquitin-like domain-containing protein.
   
 0.996
BMF94_6005
UBIQUITIN_CONJUGAT_2 domain-containing protein.
 
 0.987
BMF94_2241
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.987
BMF94_6958
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.984
BMF94_1774
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.984
BMF94_5257
Putative Acid-D-amino-acid ligase; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.980
BMF94_3715
HECT domain-containing protein.
   
 0.975
BMF94_3693
Putative Acid-D-amino-acid ligase; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.970
BMF94_5382
Uncharacterized protein.
    
 0.955
Your Current Organism:
Rhodotorula taiwanensis
NCBI taxonomy Id: 741276
Other names: A1-01, BCRC 23118, CBS 11729, R. taiwanensis, Rhodotorula sp. BCRC 23118, Rhodotorula taiwanensis Lee & Huang 2011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.