STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMF94_3134Matrin-type domain-containing protein. (213 aa)    
Predicted Functional Partners:
BMF94_6374
Matrin-type domain-containing protein.
    
 0.999
BMF94_3583
Uncharacterized protein.
   
 0.999
BMF94_2595
Uncharacterized protein.
   
 0.997
BMF94_5914
PSP domain-containing protein.
   
 0.996
BMF94_2967
SF3b1 domain-containing protein.
    
 0.996
BMF94_2524
CPSF_A domain-containing protein.
   
 0.996
BMF94_6896
Uncharacterized protein.
    
 0.995
BMF94_3443
Uncharacterized protein.
    
 0.995
BMF94_3153
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.995
BMF94_1679
Uncharacterized protein.
    
 0.995
Your Current Organism:
Rhodotorula taiwanensis
NCBI taxonomy Id: 741276
Other names: A1-01, BCRC 23118, CBS 11729, R. taiwanensis, Rhodotorula sp. BCRC 23118, Rhodotorula taiwanensis Lee & Huang 2011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.