STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMF94_2347Rhomboid domain-containing protein. (337 aa)    
Predicted Functional Partners:
BMF94_6972
PHB domain-containing protein.
   
 0.713
BMF94_6821
AAA domain-containing protein.
   
 
 0.706
BMF94_4680
Prohibitin.
   
 0.650
BMF94_0773
PHB domain-containing protein.
   
 0.628
BMF94_5548
AAA domain-containing protein.
     
 0.555
BMF94_1507
50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
     
 0.555
BMF94_6459
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.551
BMF94_2563
LEA_2 domain-containing protein.
    
 0.520
BMF94_1249
Uncharacterized protein; Belongs to the AAA ATPase family.
     
 0.518
BMF94_6964
Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 
 0.503
Your Current Organism:
Rhodotorula taiwanensis
NCBI taxonomy Id: 741276
Other names: A1-01, BCRC 23118, CBS 11729, R. taiwanensis, Rhodotorula sp. BCRC 23118, Rhodotorula taiwanensis Lee & Huang 2011
Server load: low (14%) [HD]