STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMF94_2395MRC1 domain-containing protein. (1519 aa)    
Predicted Functional Partners:
BMF94_3177
Uncharacterized protein.
    
  0.745
BMF94_6758
Uncharacterized protein.
    
  0.544
BMF94_1918
Putative Proteasome endopeptidase complex.
    
  0.537
BMF94_0730
Uncharacterized protein.
    
 0.531
BMF94_3464
Uncharacterized protein.
    
  0.526
BMF94_4988
Uncharacterized protein.
    
  0.521
BMF94_4354
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.512
BMF94_6234
14_3_3 domain-containing protein; Belongs to the 14-3-3 family.
    
 0.505
BMF94_5710
14_3_3 domain-containing protein; Belongs to the 14-3-3 family.
    
 0.505
BMF94_4351
Uncharacterized protein; Belongs to the SKP1 family.
    
  0.504
Your Current Organism:
Rhodotorula taiwanensis
NCBI taxonomy Id: 741276
Other names: A1-01, BCRC 23118, CBS 11729, R. taiwanensis, Rhodotorula sp. BCRC 23118, Rhodotorula taiwanensis Lee & Huang 2011
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