STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMF94_1255Uncharacterized protein. (849 aa)    
Predicted Functional Partners:
BMF94_1497
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.981
BMF94_4351
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.972
BMF94_2280
Uncharacterized protein.
    
 0.959
BMF94_6631
RING-type domain-containing protein.
    
 0.946
BMF94_4499
BZIP domain-containing protein.
    
 
 0.932
BMF94_0105
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.931
BMF94_1274
Protein kinase domain-containing protein.
    
 0.827
BMF94_3512
F-box domain-containing protein.
    
 0.816
BMF94_2581
Uncharacterized protein.
  
 
0.806
BMF94_0067
Ribosomal_L2_C domain-containing protein.
    
 0.806
Your Current Organism:
Rhodotorula taiwanensis
NCBI taxonomy Id: 741276
Other names: A1-01, BCRC 23118, CBS 11729, R. taiwanensis, Rhodotorula sp. BCRC 23118, Rhodotorula taiwanensis Lee & Huang 2011
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