STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMF94_1022GFO_IDH_MocA domain-containing protein. (387 aa)    
Predicted Functional Partners:
BMF94_0198
Uncharacterized protein.
  
  0.726
BMF94_2795
Uncharacterized protein.
  
 0.723
BMF94_0473
Uncharacterized protein.
  
 0.723
BMF94_4308
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.656
BMF94_5042
Nicotinamide-nucleotide adenylyltransferase; Belongs to the eukaryotic NMN adenylyltransferase family.
   
 
 0.644
BMF94_4933
Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
  0.643
BMF94_5436
Deacetylase sirtuin-type domain-containing protein.
    
  0.639
BMF94_1790
Semialdhyde_dh domain-containing protein.
   
 
  0.631
BMF94_4693
BPL/LPL catalytic domain-containing protein.
    
  0.610
BMF94_3008
Lysine--tRNA ligase.
  
    0.609
Your Current Organism:
Rhodotorula taiwanensis
NCBI taxonomy Id: 741276
Other names: A1-01, BCRC 23118, CBS 11729, R. taiwanensis, Rhodotorula sp. BCRC 23118, Rhodotorula taiwanensis Lee & Huang 2011
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