A0A2H3JB25 protein (Wolfiporia cocos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A2H3JB25

Uncharacterized protein. (236 aa)

Predicted Functional Partners:

A0A2H3JQG6

0.996

A0A2H3JC51

0.995

A0A2H3J7N7

0.993

A0A2H3JS86

0.993

A0A2H3K792

0.990

A0A2H3JV09

0.989

A0A2H3JJ57

0.988

A0A2H3J5F2

0.986

A0A2H3J8S9

0.985

A0A2H3K1U9

0.985

Your Current Organism:

Wolfiporia cocos

NCBI taxonomy Id: 742152
Other names: W. cocos MD-104 SS10, Wolfiporia cocos MD-104, Wolfiporia cocos MD-104 SS10

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2H3J5F2	A0A2H3J7N7	SURF6-domain-containing protein.	Uncharacterized protein.	0.980
A0A2H3J5F2	A0A2H3J8S9	SURF6-domain-containing protein.	Spindle pole body component.	0.988
A0A2H3J5F2	A0A2H3JB25	SURF6-domain-containing protein.	Uncharacterized protein.	0.986
A0A2H3J5F2	A0A2H3JC51	SURF6-domain-containing protein.	Eukaryotic rRNA processing.	0.996
A0A2H3J5F2	A0A2H3JJ57	SURF6-domain-containing protein.	RNA-binding domain-containing protein.	0.995
A0A2H3J5F2	A0A2H3JQG6	SURF6-domain-containing protein.	Protein MAK16; Belongs to the MAK16 family.	0.990
A0A2H3J5F2	A0A2H3JS86	SURF6-domain-containing protein.	Brix-domain-containing protein.	0.991
A0A2H3J5F2	A0A2H3JV09	SURF6-domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.984
A0A2H3J5F2	A0A2H3K1U9	SURF6-domain-containing protein.	Noc2-domain-containing protein.	0.989
A0A2H3J5F2	A0A2H3K792	SURF6-domain-containing protein.	Brix-domain-containing protein.	0.989
A0A2H3J7N7	A0A2H3J5F2	Uncharacterized protein.	SURF6-domain-containing protein.	0.980
A0A2H3J7N7	A0A2H3J8S9	Uncharacterized protein.	Spindle pole body component.	0.990
A0A2H3J7N7	A0A2H3JB25	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A2H3J7N7	A0A2H3JC51	Uncharacterized protein.	Eukaryotic rRNA processing.	0.997
A0A2H3J7N7	A0A2H3JJ57	Uncharacterized protein.	RNA-binding domain-containing protein.	0.987
A0A2H3J7N7	A0A2H3JQG6	Uncharacterized protein.	Protein MAK16; Belongs to the MAK16 family.	0.996
A0A2H3J7N7	A0A2H3JS86	Uncharacterized protein.	Brix-domain-containing protein.	0.996
A0A2H3J7N7	A0A2H3JV09	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.996
A0A2H3J7N7	A0A2H3K1U9	Uncharacterized protein.	Noc2-domain-containing protein.	0.997
A0A2H3J7N7	A0A2H3K792	Uncharacterized protein.	Brix-domain-containing protein.	0.997