A0A2H3JB70 protein (Wolfiporia cocos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2H3JB70

Rgp1-domain-containing protein. (908 aa)

Predicted Functional Partners:

A0A2H3J3N3

0.986

A0A2H3JMM4

0.872

A0A2H3IW01

0.856

A0A2H3JGM0

0.799

A0A2H3JNJ3

0.769

A0A2H3JH73

0.758

A0A2H3JWQ8

0.755

A0A2H3J7K7

0.743

A0A2H3JLS5

0.741

A0A2H3J6B9

0.736

Your Current Organism:

Wolfiporia cocos

NCBI taxonomy Id: 742152
Other names: W. cocos MD-104 SS10, Wolfiporia cocos MD-104, Wolfiporia cocos MD-104 SS10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2H3IW01	A0A2H3J3N3	Dor1-domain-containing protein.	RIC1-domain-containing protein.	0.923
A0A2H3IW01	A0A2H3J6B9	Dor1-domain-containing protein.	Vps54-domain-containing protein.	0.852
A0A2H3IW01	A0A2H3J7K7	Dor1-domain-containing protein.	GTP-binding protein ypt1.	0.757
A0A2H3IW01	A0A2H3JB70	Dor1-domain-containing protein.	Rgp1-domain-containing protein.	0.856
A0A2H3IW01	A0A2H3JGM0	Dor1-domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.994
A0A2H3IW01	A0A2H3JH73	Dor1-domain-containing protein.	Nucleoside triphosphate hydrolase protein; Belongs to the small GTPase superfamily. Arf family.	0.925
A0A2H3IW01	A0A2H3JLS5	Dor1-domain-containing protein.	Uncharacterized protein.	0.900
A0A2H3IW01	A0A2H3JMM4	Dor1-domain-containing protein.	Ras-domain-containing protein.	0.924
A0A2H3IW01	A0A2H3JNJ3	Dor1-domain-containing protein.	t-SNARE; Belongs to the syntaxin family.	0.945
A0A2H3IW01	A0A2H3JWQ8	Dor1-domain-containing protein.	Vps52-domain-containing protein.	0.863
A0A2H3J3N3	A0A2H3IW01	RIC1-domain-containing protein.	Dor1-domain-containing protein.	0.923
A0A2H3J3N3	A0A2H3J6B9	RIC1-domain-containing protein.	Vps54-domain-containing protein.	0.723
A0A2H3J3N3	A0A2H3J7K7	RIC1-domain-containing protein.	GTP-binding protein ypt1.	0.794
A0A2H3J3N3	A0A2H3JB70	RIC1-domain-containing protein.	Rgp1-domain-containing protein.	0.986
A0A2H3J3N3	A0A2H3JGM0	RIC1-domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.862
A0A2H3J3N3	A0A2H3JH73	RIC1-domain-containing protein.	Nucleoside triphosphate hydrolase protein; Belongs to the small GTPase superfamily. Arf family.	0.832
A0A2H3J3N3	A0A2H3JLS5	RIC1-domain-containing protein.	Uncharacterized protein.	0.764
A0A2H3J3N3	A0A2H3JMM4	RIC1-domain-containing protein.	Ras-domain-containing protein.	0.972
A0A2H3J3N3	A0A2H3JNJ3	RIC1-domain-containing protein.	t-SNARE; Belongs to the syntaxin family.	0.792
A0A2H3J3N3	A0A2H3JWQ8	RIC1-domain-containing protein.	Vps52-domain-containing protein.	0.689