STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGG84771.1Hypothetical protein. (312 aa)    
Predicted Functional Partners:
EGG84767.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
    0.783
EGG84769.1
TIGR00252 family protein; Belongs to the UPF0102 family.
       0.776
EGG84770.1
Hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.775
rnhB
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.772
EGG84766.1
Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
       0.728
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
     
 0.563
EGG84773.1
Hypothetical protein.
       0.428
EGG84772.1
Hypothetical protein.
       0.425
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
     
 0.408
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.404
Your Current Organism:
Lachnospiraceae bacterium 2146FAA
NCBI taxonomy Id: 742723
Other names: L. bacterium 2_1_46FAA, Lachnospiraceae bacterium 2_1_46FAA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.