STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJZ64881.1Hypothetical protein; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
EJZ64882.1
Shikimate 5-dehydrogenase.
     
 0.790
EJZ64883.1
Hypothetical protein.
       0.736
EJZ64624.1
Hypothetical protein.
   
 
 0.712
EJZ64880.1
Hypothetical protein.
       0.686
EJZ65233.1
Hypothetical protein.
 
  
 0.455
EJZ62984.1
Hypothetical protein.
 
  
 0.445
EJZ66323.1
Hypothetical protein.
  
  
 0.440
EJZ63817.1
YihY family inner membrane protein.
  
   
 0.434
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
 
 0.419
EJZ62411.1
Hypothetical protein.
  
  
 0.417
Your Current Organism:
Barnesiella intestinihominis
NCBI taxonomy Id: 742726
Other names: B. intestinihominis YIT 11860, Barnesiella intestinihominis YIT 11860, Barnesiella intestinihominis str. YIT 11860, Barnesiella intestinihominis strain YIT 11860
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.