STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJZ62035.1Hypothetical protein. (345 aa)    
Predicted Functional Partners:
EJZ62034.1
RNA polymerase sigma-70 factor, expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.860
EJZ62045.1
RNA polymerase sigma-70 factor, expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.809
EJZ66505.1
RNA polymerase sigma-70 factor, expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.802
EJZ64924.1
RNA polymerase sigma-70 factor, expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.675
EJZ62036.1
SusC/RagA family TonB-linked outer membrane protein.
 
    0.669
EJZ66186.1
RNA polymerase sigma-70 factor, expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.624
EJZ65930.1
RNA polymerase sigma-70 factor, expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.622
EJZ62037.1
Hypothetical protein.
 
     0.591
EJZ62875.1
RNA polymerase sigma-70 factor, expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.534
EJZ62181.1
RNA polymerase sigma-70 factor, expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.510
Your Current Organism:
Barnesiella intestinihominis
NCBI taxonomy Id: 742726
Other names: B. intestinihominis YIT 11860, Barnesiella intestinihominis YIT 11860, Barnesiella intestinihominis str. YIT 11860, Barnesiella intestinihominis strain YIT 11860
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.