STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJZ62129.1Hypothetical protein. (235 aa)    
Predicted Functional Partners:
EJZ62128.1
Hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
    0.763
EJZ62381.1
Hypothetical protein.
  
     0.717
EJZ61875.1
Hypothetical protein.
  
     0.717
EJZ61922.1
Hypothetical protein.
  
     0.712
EJZ63759.1
Hypothetical protein.
  
   0.701
EJZ64893.1
Hypothetical protein.
  
     0.688
EJZ63331.1
Hypothetical protein.
  
     0.685
EJZ64810.1
Hypothetical protein.
  
     0.661
EJZ62159.1
Hypothetical protein.
  
     0.648
EJZ62403.1
Hypothetical protein.
   
   0.643
Your Current Organism:
Barnesiella intestinihominis
NCBI taxonomy Id: 742726
Other names: B. intestinihominis YIT 11860, Barnesiella intestinihominis YIT 11860, Barnesiella intestinihominis str. YIT 11860, Barnesiella intestinihominis strain YIT 11860
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.