STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM46497.1KEGG: afr:AFE_2882 uracil-DNA glycosylase family 4 protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like. (301 aa)    
Predicted Functional Partners:
AEM46498.1
Lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; KEGG: bsa:Bacsa_0892 alpha-L-fucosidase.
  
    0.593
AEM47133.1
PFAM: Peptidase M23; KEGG: afr:AFE_0525 M23/M37 peptidase domain protein.
   
   0.568
AEM46496.1
KEGG: afr:AFE_2891 hypothetical protein.
       0.508
AEM47581.1
PFAM: Molybdopterin binding; KEGG: afr:AFE_1894 hypothetical protein.
 
    0.497
AEM47102.1
ComEC/Rec2-related protein; KEGG: afr:AFE_0484 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
  
   
 0.430
AEM48529.1
Universal protein YeaZ; KEGG: afr:AFE_2516 hypothetical protein; TIGRFAM: universal protein YeaZ; PFAM: Peptidase M22, glycoprotease.
  
    0.426
AEM46529.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
   0.405
AEM49062.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
   0.405
Your Current Organism:
Acidithiobacillus ferrivorans
NCBI taxonomy Id: 743299
Other names: A. ferrivorans SS3, Acidithiobacillus ferrivorans SS3, Acidithiobacillus ferrivorans str. SS3, Acidithiobacillus ferrivorans strain SS3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.