Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEM47393.1PFAM: Polysaccharide deacetylase; KEGG: afe:Lferr_1828 polysaccharide deacetylase. (278 aa)    
Predicted Functional Partners:
AEM47392.1
KEGG: afr:AFE_2171 GTP-binding protein.
       0.786
AEM47394.1
KEGG: afr:AFE_2160 hypothetical protein.
  
    0.508
Your Current Organism:
Acidithiobacillus ferrivorans
NCBI taxonomy Id: 743299
Other names: A. ferrivorans SS3, Acidithiobacillus ferrivorans SS3, Acidithiobacillus ferrivorans str. SS3, Acidithiobacillus ferrivorans strain SS3
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