STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD50621.1Pectate lyase superfamily protein. (762 aa)    
Predicted Functional Partners:
SFE32516.1
Head-tail adaptor.
  
 
 0.940
SFE32301.1
Phage portal protein, HK97 family.
  
   0.939
SFE92033.1
Hint domain-containing protein.
  
  0.822
SFD77310.1
Hint domain-containing protein.
 
 
   0.795
SFE66521.1
Hint domain-containing protein.
  
  0.783
SFE01506.1
Hint domain-containing protein.
  
  0.741
SFE17438.1
Core-2/I-Branching enzyme.
  
     0.740
SFE64153.1
Hypothetical protein.
  
     0.740
SFE17470.1
Hypothetical protein.
  
     0.735
SFD90050.1
Core-2/I-Branching enzyme.
  
     0.730
Your Current Organism:
Sulfitobacter brevis
NCBI taxonomy Id: 74348
Other names: ATCC BAA-4, DSM 11443, JCM 21790, S. brevis, Sulfitobacter brevis Labrenz et al. 2000, strain EL-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.