SFD51265.1 protein (Sulfitobacter brevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFD51265.1

Dihydrouracil dehydrogenase (NAD+). (434 aa)

Predicted Functional Partners:

SFD51298.1

0.999

SFD51140.1

0.996

pyrE

0.987

SFD56612.1

0.979

pyrC

0.977

SFD59449.1

0.968

SFE18547.1

0.962

pyrF

0.941

SFE84305.1

0.939

carB

0.938

Your Current Organism:

Sulfitobacter brevis

NCBI taxonomy Id: 74348
Other names: ATCC BAA-4, DSM 11443, JCM 21790, S. brevis, Sulfitobacter brevis Labrenz et al. 2000, strain EL-162

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFD51140.1	SFD51265.1	SAMN04488523_101199	SAMN04488523_101203	Dihydropyrimidinase.	Dihydrouracil dehydrogenase (NAD+).	0.996
SFD51140.1	SFD51298.1	SAMN04488523_101199	SAMN04488523_101204	Dihydropyrimidinase.	Glutamate synthase (NADPH/NADH) small chain.	0.976
SFD51140.1	SFD56612.1	SAMN04488523_101199	SAMN04488523_101355	Dihydropyrimidinase.	Dihydroorotase.	0.823
SFD51140.1	SFE18547.1	SAMN04488523_101199	SAMN04488523_105253	Dihydropyrimidinase.	Glutamate synthase (NADPH) small subunit.	0.701
SFD51140.1	SFE84305.1	SAMN04488523_101199	SAMN04488523_11112	Dihydropyrimidinase.	4Fe-4S dicluster domain-containing protein.	0.454
SFD51140.1	carB	SAMN04488523_101199	SAMN04488523_101218	Dihydropyrimidinase.	Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.	0.905
SFD51140.1	pyrC	SAMN04488523_101199	SAMN04488523_109120	Dihydropyrimidinase.	Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.	0.562
SFD51140.1	pyrE	SAMN04488523_101199	SAMN04488523_109119	Dihydropyrimidinase.	Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).	0.921
SFD51140.1	pyrF	SAMN04488523_101199	SAMN04488523_1037	Dihydropyrimidinase.	Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.	0.897
SFD51265.1	SFD51140.1	SAMN04488523_101203	SAMN04488523_101199	Dihydrouracil dehydrogenase (NAD+).	Dihydropyrimidinase.	0.996
SFD51265.1	SFD51298.1	SAMN04488523_101203	SAMN04488523_101204	Dihydrouracil dehydrogenase (NAD+).	Glutamate synthase (NADPH/NADH) small chain.	0.999
SFD51265.1	SFD56612.1	SAMN04488523_101203	SAMN04488523_101355	Dihydrouracil dehydrogenase (NAD+).	Dihydroorotase.	0.979
SFD51265.1	SFD59449.1	SAMN04488523_101203	SAMN04488523_101432	Dihydrouracil dehydrogenase (NAD+).	Hypothetical protein.	0.968
SFD51265.1	SFE18547.1	SAMN04488523_101203	SAMN04488523_105253	Dihydrouracil dehydrogenase (NAD+).	Glutamate synthase (NADPH) small subunit.	0.962
SFD51265.1	SFE84305.1	SAMN04488523_101203	SAMN04488523_11112	Dihydrouracil dehydrogenase (NAD+).	4Fe-4S dicluster domain-containing protein.	0.939
SFD51265.1	carB	SAMN04488523_101203	SAMN04488523_101218	Dihydrouracil dehydrogenase (NAD+).	Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.	0.938
SFD51265.1	pyrC	SAMN04488523_101203	SAMN04488523_109120	Dihydrouracil dehydrogenase (NAD+).	Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.	0.977
SFD51265.1	pyrE	SAMN04488523_101203	SAMN04488523_109119	Dihydrouracil dehydrogenase (NAD+).	Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).	0.987
SFD51265.1	pyrF	SAMN04488523_101203	SAMN04488523_1037	Dihydrouracil dehydrogenase (NAD+).	Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.	0.941
SFD51298.1	SFD51140.1	SAMN04488523_101204	SAMN04488523_101199	Glutamate synthase (NADPH/NADH) small chain.	Dihydropyrimidinase.	0.976