STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD85527.1LPS-assembly lipoprotein. (160 aa)    
Predicted Functional Partners:
SFD85547.1
DNA polymerase III, delta subunit.
 
    0.921
SFD85482.1
Protein of unknown function.
 
     0.892
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.864
SFD85570.1
Glutathione S-transferase.
       0.828
SFE17638.1
Lipopolysaccharide export system protein LptC.
  
     0.687
lptD
LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.670
SFE04164.1
Hypothetical protein.
  
     0.578
SFE42970.1
Hypothetical protein.
  
     0.570
SFD78716.1
Protein RodZ, contains Xre-like HTH and DUF4115 domains.
  
     0.533
SFE56561.1
Hypothetical protein.
  
     0.531
Your Current Organism:
Sulfitobacter brevis
NCBI taxonomy Id: 74348
Other names: ATCC BAA-4, DSM 11443, JCM 21790, S. brevis, Sulfitobacter brevis Labrenz et al. 2000, strain EL-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.