Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFD84200.1 | SFD84226.1 | SAMN04488523_10346 | SAMN04488523_10347 | Zinc protease. | Zinc protease; Belongs to the peptidase M16 family. | 0.994 |
SFD84200.1 | SFD84254.1 | SAMN04488523_10346 | SAMN04488523_10348 | Zinc protease. | Beta-barrel assembly machine subunit BamF. | 0.697 |
SFD84200.1 | SFD84323.1 | SAMN04488523_10346 | SAMN04488523_10351 | Zinc protease. | Uncharacterized conserved protein, heparinase superfamily. | 0.570 |
SFD84200.1 | lspA | SAMN04488523_10346 | SAMN04488523_10349 | Zinc protease. | Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.663 |
SFD84200.1 | purH | SAMN04488523_10346 | SAMN04488523_10350 | Zinc protease. | Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase. | 0.638 |
SFD84226.1 | SFD84200.1 | SAMN04488523_10347 | SAMN04488523_10346 | Zinc protease; Belongs to the peptidase M16 family. | Zinc protease. | 0.994 |
SFD84226.1 | SFD84254.1 | SAMN04488523_10347 | SAMN04488523_10348 | Zinc protease; Belongs to the peptidase M16 family. | Beta-barrel assembly machine subunit BamF. | 0.697 |
SFD84226.1 | SFD84323.1 | SAMN04488523_10347 | SAMN04488523_10351 | Zinc protease; Belongs to the peptidase M16 family. | Uncharacterized conserved protein, heparinase superfamily. | 0.557 |
SFD84226.1 | lspA | SAMN04488523_10347 | SAMN04488523_10349 | Zinc protease; Belongs to the peptidase M16 family. | Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.663 |
SFD84226.1 | purH | SAMN04488523_10347 | SAMN04488523_10350 | Zinc protease; Belongs to the peptidase M16 family. | Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase. | 0.637 |
SFD84254.1 | SFD84200.1 | SAMN04488523_10348 | SAMN04488523_10346 | Beta-barrel assembly machine subunit BamF. | Zinc protease. | 0.697 |
SFD84254.1 | SFD84226.1 | SAMN04488523_10348 | SAMN04488523_10347 | Beta-barrel assembly machine subunit BamF. | Zinc protease; Belongs to the peptidase M16 family. | 0.697 |
SFD84254.1 | SFD84323.1 | SAMN04488523_10348 | SAMN04488523_10351 | Beta-barrel assembly machine subunit BamF. | Uncharacterized conserved protein, heparinase superfamily. | 0.777 |
SFD84254.1 | lspA | SAMN04488523_10348 | SAMN04488523_10349 | Beta-barrel assembly machine subunit BamF. | Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.787 |
SFD84254.1 | purH | SAMN04488523_10348 | SAMN04488523_10350 | Beta-barrel assembly machine subunit BamF. | Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase. | 0.760 |
SFD84323.1 | SFD84200.1 | SAMN04488523_10351 | SAMN04488523_10346 | Uncharacterized conserved protein, heparinase superfamily. | Zinc protease. | 0.570 |
SFD84323.1 | SFD84226.1 | SAMN04488523_10351 | SAMN04488523_10347 | Uncharacterized conserved protein, heparinase superfamily. | Zinc protease; Belongs to the peptidase M16 family. | 0.557 |
SFD84323.1 | SFD84254.1 | SAMN04488523_10351 | SAMN04488523_10348 | Uncharacterized conserved protein, heparinase superfamily. | Beta-barrel assembly machine subunit BamF. | 0.777 |
SFD84323.1 | lspA | SAMN04488523_10351 | SAMN04488523_10349 | Uncharacterized conserved protein, heparinase superfamily. | Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.832 |
SFD84323.1 | purH | SAMN04488523_10351 | SAMN04488523_10350 | Uncharacterized conserved protein, heparinase superfamily. | Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase. | 0.842 |
page 1 of 3