STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD97903.1Peroxiredoxin. (529 aa)    
Predicted Functional Partners:
SFD97862.1
Selenocysteine-specific elongation factor.
 
     0.725
SFE98883.1
Replication initiation protein RepC.
  
     0.691
SFD97932.1
Hypothetical protein.
       0.669
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
     0.656
SFE87709.1
Glutathione S-transferase.
  
    0.641
SFE98333.1
Helix-turn-helix.
  
     0.606
SFD97956.1
Hypothetical protein.
       0.605
SFD97777.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
     0.531
SFD97805.1
Acetolactate synthase-1/2/3 large subunit.
 
     0.498
SFD97720.1
TRAP transporter solute receptor, TAXI family.
 
     0.478
Your Current Organism:
Sulfitobacter brevis
NCBI taxonomy Id: 74348
Other names: ATCC BAA-4, DSM 11443, JCM 21790, S. brevis, Sulfitobacter brevis Labrenz et al. 2000, strain EL-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.