STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE12994.1Indolepyruvate ferredoxin oxidoreductase beta subunit. (511 aa)    
Predicted Functional Partners:
SFE13028.1
Indolepyruvate ferredoxin oxidoreductase alpha subunit.
 
 0.981
SFE13146.1
Kynurenine formamidase.
 
  
  0.957
SFE13063.1
DNA-binding transcriptional regulator, MarR family.
 
    0.946
SFE13107.1
Phytoene dehydrogenase-related protein.
 
     0.909
SFE18577.1
Glutamate synthase (NADPH) large subunit.
    
 0.878
SFE13221.1
Peptide/nickel transport system substrate-binding protein.
 
    0.834
SFE13185.1
Phytoene dehydrogenase-related protein.
 
     0.788
SFF07343.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.762
SFF07368.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.744
SFE04367.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.698
Your Current Organism:
Sulfitobacter brevis
NCBI taxonomy Id: 74348
Other names: ATCC BAA-4, DSM 11443, JCM 21790, S. brevis, Sulfitobacter brevis Labrenz et al. 2000, strain EL-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.