STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE13107.1Phytoene dehydrogenase-related protein. (519 aa)    
Predicted Functional Partners:
SFE69875.1
Phytoene/squalene synthetase.
  
 
 0.953
SFE13146.1
Kynurenine formamidase.
 
     0.917
SFE12994.1
Indolepyruvate ferredoxin oxidoreductase beta subunit.
 
     0.909
SFE13063.1
DNA-binding transcriptional regulator, MarR family.
 
     0.889
SFE13028.1
Indolepyruvate ferredoxin oxidoreductase alpha subunit.
 
     0.885
SFE13221.1
Peptide/nickel transport system substrate-binding protein.
 
     0.866
SFE13258.1
Peptide/nickel transport system permease protein.
 
     0.709
SFE19497.1
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.638
SFE13298.1
Peptide/nickel transport system permease protein.
 
     0.633
SFE13185.1
Phytoene dehydrogenase-related protein.
 
    
0.630
Your Current Organism:
Sulfitobacter brevis
NCBI taxonomy Id: 74348
Other names: ATCC BAA-4, DSM 11443, JCM 21790, S. brevis, Sulfitobacter brevis Labrenz et al. 2000, strain EL-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.