Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFE24999.1Transcriptional regulator, TetR family. (196 aa)    
Predicted Functional Partners:
SFE24962.1
Hypothetical protein.
       0.593
SFD54703.1
Reductive dehalogenase.
 
 
 0.525
SFE17819.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.505
SFD83644.1
Long-chain acyl-CoA synthetase.
  
     0.496
SFD83666.1
Hypothetical protein.
  
 
 
 0.495
SFE40334.1
Transcriptional regulator, TetR family.
  
     0.437
SFF02461.1
Phthalate 4,5-dioxygenase reductase subunit.
  
 
 0.411
Your Current Organism:
Sulfitobacter brevis
NCBI taxonomy Id: 74348
Other names: ATCC BAA-4, DSM 11443, JCM 21790, S. brevis, Sulfitobacter brevis Labrenz et al. 2000, strain EL-162
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