STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE57654.1Prepilin peptidase CpaA. (164 aa)    
Predicted Functional Partners:
SFE57689.1
Hypothetical protein.
 
   
 0.968
SFE58009.1
Pilus assembly protein CpaB.
 
  
 0.942
SFE57739.1
TPR repeat-containing protein.
 
   
 0.941
SFE57806.1
Type II secretion system protein F (GspF).
 
  
 0.906
SFE58079.1
Hypothetical protein.
 
  
 0.897
SFE57874.1
Pilus assembly protein CpaE.
 
  
 0.896
SFE57624.1
Hypothetical protein.
 
     0.886
SFE57969.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.835
SFE57921.1
Outer membrane protein OmpA.
 
     0.819
SFE57771.1
Tight adherence protein C.
 
   
 0.778
Your Current Organism:
Sulfitobacter brevis
NCBI taxonomy Id: 74348
Other names: ATCC BAA-4, DSM 11443, JCM 21790, S. brevis, Sulfitobacter brevis Labrenz et al. 2000, strain EL-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.