Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFE52764.1 | SFE91613.1 | SAMN04488523_10833 | SAMN04488523_11232 | Hypothetical protein. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.960 |
SFE52764.1 | SFE91673.1 | SAMN04488523_10833 | SAMN04488523_11234 | Hypothetical protein. | Choline-sulfatase. | 0.469 |
SFE52764.1 | rpoB | SAMN04488523_10833 | SAMN04488523_12310 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.421 |
SFE54529.1 | SFE91673.1 | SAMN04488523_10881 | SAMN04488523_11234 | Ergothioneine biosynthesis protein EgtB. | Choline-sulfatase. | 0.922 |
SFE91613.1 | SFE52764.1 | SAMN04488523_11232 | SAMN04488523_10833 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Hypothetical protein. | 0.960 |
SFE91613.1 | SFE91673.1 | SAMN04488523_11232 | SAMN04488523_11234 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Choline-sulfatase. | 0.513 |
SFE91613.1 | betB | SAMN04488523_11232 | SAMN04488523_11233 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.956 |
SFE91613.1 | betI | SAMN04488523_11232 | SAMN04488523_11235 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. | 0.760 |
SFE91673.1 | SFE52764.1 | SAMN04488523_11234 | SAMN04488523_10833 | Choline-sulfatase. | Hypothetical protein. | 0.469 |
SFE91673.1 | SFE54529.1 | SAMN04488523_11234 | SAMN04488523_10881 | Choline-sulfatase. | Ergothioneine biosynthesis protein EgtB. | 0.922 |
SFE91673.1 | SFE91613.1 | SAMN04488523_11234 | SAMN04488523_11232 | Choline-sulfatase. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.513 |
SFE91673.1 | SFE91738.1 | SAMN04488523_11234 | SAMN04488523_11236 | Choline-sulfatase. | Threonine/homoserine efflux transporter RhtA. | 0.548 |
SFE91673.1 | SFF20409.1 | SAMN04488523_11234 | SAMN04488523_12915 | Choline-sulfatase. | Hypothetical protein. | 0.499 |
SFE91673.1 | betB | SAMN04488523_11234 | SAMN04488523_11233 | Choline-sulfatase. | Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.635 |
SFE91673.1 | betI | SAMN04488523_11234 | SAMN04488523_11235 | Choline-sulfatase. | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. | 0.832 |
SFE91673.1 | rpoA | SAMN04488523_11234 | SAMN04488523_101444 | Choline-sulfatase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.508 |
SFE91673.1 | rpoB | SAMN04488523_11234 | SAMN04488523_12310 | Choline-sulfatase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.459 |
SFE91673.1 | rpoZ | SAMN04488523_11234 | SAMN04488523_110172 | Choline-sulfatase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.500 |
SFE91738.1 | SFE91673.1 | SAMN04488523_11236 | SAMN04488523_11234 | Threonine/homoserine efflux transporter RhtA. | Choline-sulfatase. | 0.548 |
SFE91738.1 | betB | SAMN04488523_11236 | SAMN04488523_11233 | Threonine/homoserine efflux transporter RhtA. | Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.449 |
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