STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE99655.1Uncharacterized conserved protein, DUF849 family. (296 aa)    
Predicted Functional Partners:
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.809
SFE99599.1
Carnitine 3-dehydrogenase.
 
  
 0.790
SFE99682.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.773
SFE64315.1
acyl-CoA thioester hydrolase.
 
 
 0.755
SFE99711.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
     0.639
SFE99625.1
Transcriptional regulator, AraC family with amidase-like domain.
 
     0.614
SFE58201.1
3-oxoacid CoA-transferase subunit A.
    
 0.546
SFE99827.1
Acyl-CoA synthetase (NDP forming).
 
     0.544
SFE58163.1
3-oxoacid CoA-transferase subunit B.
    
  0.532
SFE99795.1
acyl-CoA dehydrogenase.
 
     0.525
Your Current Organism:
Sulfitobacter brevis
NCBI taxonomy Id: 74348
Other names: ATCC BAA-4, DSM 11443, JCM 21790, S. brevis, Sulfitobacter brevis Labrenz et al. 2000, strain EL-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.