STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF20110.1Type IV secretion system T-DNA border endonuclease VirD2. (742 aa)    
Predicted Functional Partners:
SFF20085.1
Type IV secretion system protein VirD4.
 
   
 0.958
SFF20128.1
Helix-turn-helix domain-containing protein.
 
     0.956
SFF19705.1
Type IV secretion system protein VirB4.
 
   
 0.800
SFE99322.1
Type IV secretion system protein VirD4.
 
   
 0.797
SFF19649.1
Type IV secretion system protein VirB2.
 
     0.779
SFF19679.1
Type IV secretion system protein VirB3.
 
     0.779
SFF19803.1
Type IV secretion system protein VirB8.
 
     0.779
SFF19781.1
Type IV secretion system protein VirB5.
  
     0.774
SFF19595.1
Hypothetical protein.
  
     0.773
SFE98202.1
Type IV secretion system protein VirB3.
 
     0.772
Your Current Organism:
Sulfitobacter brevis
NCBI taxonomy Id: 74348
Other names: ATCC BAA-4, DSM 11443, JCM 21790, S. brevis, Sulfitobacter brevis Labrenz et al. 2000, strain EL-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.