SFF28629.1 protein (Sulfitobacter brevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFF28629.1

Mobilisation protein (MobC). (127 aa)

Predicted Functional Partners:

SFF28646.1

0.927

SFE45142.1

0.762

SFE96277.1

0.590

SFE45209.1

0.589

SFF28610.1

0.545

SFD51265.1

0.513

SFD68261.1

0.506

SFF28593.1

0.460

SFD54703.1

0.436

SFE17819.1

0.432

Your Current Organism:

Sulfitobacter brevis

NCBI taxonomy Id: 74348
Other names: ATCC BAA-4, DSM 11443, JCM 21790, S. brevis, Sulfitobacter brevis Labrenz et al. 2000, strain EL-162

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFD51265.1	SFD54703.1	SAMN04488523_101203	SAMN04488523_101306	Dihydrouracil dehydrogenase (NAD+).	Reductive dehalogenase.	0.709
SFD51265.1	SFE17819.1	SAMN04488523_101203	SAMN04488523_105230	Dihydrouracil dehydrogenase (NAD+).	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	0.606
SFD51265.1	SFE45142.1	SAMN04488523_101203	SAMN04488523_107135	Dihydrouracil dehydrogenase (NAD+).	Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.	0.657
SFD51265.1	SFE96277.1	SAMN04488523_101203	SAMN04488523_11364	Dihydrouracil dehydrogenase (NAD+).	NAD(P)H-dependent FMN reductase.	0.466
SFD51265.1	SFF28629.1	SAMN04488523_101203	SAMN04488523_1513	Dihydrouracil dehydrogenase (NAD+).	Mobilisation protein (MobC).	0.513
SFD54703.1	SFD51265.1	SAMN04488523_101306	SAMN04488523_101203	Reductive dehalogenase.	Dihydrouracil dehydrogenase (NAD+).	0.709
SFD54703.1	SFE17819.1	SAMN04488523_101306	SAMN04488523_105230	Reductive dehalogenase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	0.592
SFD54703.1	SFE45142.1	SAMN04488523_101306	SAMN04488523_107135	Reductive dehalogenase.	Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.	0.728
SFD54703.1	SFE45209.1	SAMN04488523_101306	SAMN04488523_107137	Reductive dehalogenase.	Acyl transferase domain-containing protein.	0.738
SFD54703.1	SFE96277.1	SAMN04488523_101306	SAMN04488523_11364	Reductive dehalogenase.	NAD(P)H-dependent FMN reductase.	0.545
SFD54703.1	SFF28629.1	SAMN04488523_101306	SAMN04488523_1513	Reductive dehalogenase.	Mobilisation protein (MobC).	0.436
SFD68261.1	SFE45142.1	SAMN04488523_10260	SAMN04488523_107135	Hypothetical protein.	Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.	0.540
SFD68261.1	SFE96277.1	SAMN04488523_10260	SAMN04488523_11364	Hypothetical protein.	NAD(P)H-dependent FMN reductase.	0.620
SFD68261.1	SFF28629.1	SAMN04488523_10260	SAMN04488523_1513	Hypothetical protein.	Mobilisation protein (MobC).	0.506
SFE17819.1	SFD51265.1	SAMN04488523_105230	SAMN04488523_101203	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Dihydrouracil dehydrogenase (NAD+).	0.606
SFE17819.1	SFD54703.1	SAMN04488523_105230	SAMN04488523_101306	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Reductive dehalogenase.	0.592
SFE17819.1	SFE45142.1	SAMN04488523_105230	SAMN04488523_107135	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.	0.658
SFE17819.1	SFE45209.1	SAMN04488523_105230	SAMN04488523_107137	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Acyl transferase domain-containing protein.	0.737
SFE17819.1	SFE96277.1	SAMN04488523_105230	SAMN04488523_11364	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	NAD(P)H-dependent FMN reductase.	0.570
SFE17819.1	SFF28629.1	SAMN04488523_105230	SAMN04488523_1513	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Mobilisation protein (MobC).	0.432