STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pacLCation-transporting ATPase PacL. (812 aa)    
Predicted Functional Partners:
ADW21586.1
Sodium/calcium exchanger membrane region.
 
 
 0.862
apr1
Subtilisin BPN; Alkaline protease; subtilisin DFE; subtilisin novo; Belongs to the peptidase S8 family.
   
 0.833
prkA
PrkA protein.
   
  
 0.773
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
     
 0.763
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
 
 0.760
ADW22799.1
Stage II sporulation protein D.
   
  
 0.752
hslV
ATP-dependent protease HslVU, peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
      
 0.746
hslU
ATP-dependent protease HslVU, ATPase subunit.
      
 0.746
mraZ
MraZ protein; Belongs to the MraZ family.
      
 0.746
tldD
TldD protein.
      
 0.746
Your Current Organism:
Thermus scotoductus
NCBI taxonomy Id: 743525
Other names: T. scotoductus SA-01, Thermus scotoductus SA-01, Thermus scotoductus str. SA-01, Thermus scotoductus strain SA-01, Thermus sp. SA-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.