Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADW22579.1Peptide ABC transporter, permease protein. (452 aa)    
Predicted Functional Partners:
appB1
Oligopeptide transport system permease protein AppB.
 
 
 0.979
appD
Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.
 
 0.963
appF
Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
 
 
 0.953
appA
Oligopeptide-binding protein AppA.
 
 
 0.948
appB2
Oligopeptide transport system permease protein AppB.
 
 
 0.892
ADW21692.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.891
ADW21820.1
Putative peptide ABC transporter permease protein y4tP.
 
 
 0.889
ddpB
Putative D,D-dipeptide transport system permease protein DdpB.
 
 
 0.885
ADW21135.1
ABC transporter, permease protein.
 
 
 0.881
ADW21697.1
ABC-type dipeptide transport system, periplasmic component.
 
 
 0.646
Your Current Organism:
Thermus scotoductus
NCBI taxonomy Id: 743525
Other names: T. scotoductus SA-01, Thermus scotoductus SA-01, Thermus scotoductus str. SA-01, Thermus scotoductus strain SA-01, Thermus sp. SA-01
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