STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appAOligopeptide-binding protein AppA. (583 aa)    
Predicted Functional Partners:
ADW22579.1
Peptide ABC transporter, permease protein.
 
 
 0.948
appB1
Oligopeptide transport system permease protein AppB.
 
 
 0.947
appD
Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.
 
 
 0.784
appB2
Oligopeptide transport system permease protein AppB.
 
 
 0.764
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
    0.759
appF
Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
 
 
 0.733
appC
Oligopeptide transport system permease protein AppC.
 
 
 0.732
gsiD2
Glutathione transport system permease protein GsiD.
 
 
 0.725
ADW21692.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.724
gsiD4
Glutathione transport system permease protein GsiD.
 
 
 0.709
Your Current Organism:
Thermus scotoductus
NCBI taxonomy Id: 743525
Other names: T. scotoductus SA-01, Thermus scotoductus SA-01, Thermus scotoductus str. SA-01, Thermus scotoductus strain SA-01, Thermus sp. SA-01
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