STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG42928.1PFAM: Protein of unknown function DUF2087; KEGG: cfl:Cfla_0964 protein of unknown function DUF2087. (116 aa)    
Predicted Functional Partners:
AEG42927.1
PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: xce:Xcel_0084 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin.
  
    0.774
AEG42929.1
PFAM: YbaK/aminoacyl-tRNA synthetase associated region; KEGG: xce:Xcel_2094 YbaK/prolyl-tRNA synthetase associated region.
       0.773
AEG42930.1
KEGG: xce:Xcel_0085 anti-sigma-factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS.
       0.492
pxpA
UPF0271 protein ybgL; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.469
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.