STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG42963.1Protein of unknown function DUF2236; KEGG: sgr:SGR_1221 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2236. (495 aa)    
Predicted Functional Partners:
AEG42961.1
PFAM: AMP-dependent synthetase/ligase; Alpha/beta hydrolase fold-1; KEGG: ske:Sked_36600 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
     0.687
AEG42962.1
Sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating); KEGG: ske:Sked_36590 nucleoside-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase.
 
     0.680
AEG42960.1
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: mts:MTES_0535 3-oxoacyl-[acyl-carrier-protein] synthase III.
       0.634
AEG42959.1
KEGG: xce:Xcel_0112 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase.
       0.428
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.