STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG43192.1KEGG: xce:Xcel_0334 hypothetical protein. (295 aa)    
Predicted Functional Partners:
AEG43193.1
KEGG: xce:Xcel_0335 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2.
       0.773
AEG43191.1
KEGG: xce:Xcel_0333 aspartyl aminopeptidase; PFAM: Peptidase M18, aminopeptidase I.
       0.603
AEG43194.1
KEGG: psa:PST_0375 arsenical pump-driving ATPase; PFAM: ATPase, anion-transporting.
       0.596
AEG43195.1
KEGG: psa:PST_0376 superfamily II DNA helicase.
       0.596
AEG43196.1
PFAM: Carbon starvation protein CstA; KEGG: kse:Ksed_03070 carbon starvation protein, putative membrane protein.
       0.596
AEG43189.1
PFAM: HpcH/HpaI aldolase; KEGG: gob:Gobs_4340 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.401
AEG43190.1
TIGRFAM: helicase/secretion neighborhood putative DEAH-box helicase; PFAM: Protein of unknown function DUF1998; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: xce:Xcel_0330 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal.
       0.401
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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