STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG43205.1PFAM: Methyltransferase small; KEGG: xce:Xcel_0342 methyltransferase small; Belongs to the methyltransferase superfamily. (541 aa)    
Predicted Functional Partners:
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
 
 0.910
AEG43203.1
KEGG: xce:Xcel_0340 hypothetical protein.
       0.773
AEG43204.1
KEGG: xce:Xcel_0341 hypothetical protein.
       0.773
AEG43873.1
KEGG: xce:Xcel_1124 hypothetical protein.
    
 0.648
AEG44087.1
KEGG: xce:Xcel_1312 hypothetical protein.
 
     0.575
AEG43202.1
PFAM: Protein of unknown function DUF664; KEGG: xce:Xcel_0339 hypothetical protein.
       0.536
AEG44348.1
PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; KEGG: xce:Xcel_1723 Fmu (Sun) domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
 
 0.532
AEG45388.1
KEGG: xce:Xcel_3028 folate-binding protein YgfZ; TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; Belongs to the GcvT family.
  
    0.522
AEG44538.1
KEGG: xce:Xcel_1931 hypothetical protein.
  
     0.504
AEG43806.1
KEGG: xce:Xcel_1051 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal.
 
 
   0.499
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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