STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG43210.1KEGG: xce:Xcel_0343 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase. (318 aa)    
Predicted Functional Partners:
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.721
AEG42961.1
PFAM: AMP-dependent synthetase/ligase; Alpha/beta hydrolase fold-1; KEGG: ske:Sked_36600 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.695
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.678
AEG43230.1
KEGG: msm:MSMEG_2469 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
    
 0.660
AEG43360.1
KEGG: xce:Xcel_0451 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
    
 0.660
AEG45237.1
KEGG: xce:Xcel_2811 hypothetical protein.
  
     0.558
AEG43209.1
PFAM: Beta-lactamase-related; KEGG: kra:Krad_0951 beta-lactamase.
       0.549
AEG44969.1
KEGG: xce:Xcel_2424 hypothetical protein.
  
     0.493
AEG45441.1
KEGG: xce:Xcel_0234 hypothetical protein.
  
     0.492
AEG45244.1
KEGG: xce:Xcel_2819 hypothetical protein.
  
     0.465
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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