STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG43306.1PFAM: Bacterial extracellular solute-binding, family 1; KEGG: tfu:Tfu_1702 sugar-binding protein. (447 aa)    
Predicted Functional Partners:
AEG43304.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ske:Sked_05250 carbohydrate ABC transporter membrane protein.
 
   0.933
AEG43305.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ske:Sked_05240 carbohydrate ABC transporter membrane protein.
 
   0.929
AEG43267.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: xce:Xcel_0898 binding-protein-dependent transport systems inner membrane component.
 
   0.852
AEG43268.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ske:Sked_05440 carbohydrate ABC transporter membrane protein.
 
   0.799
AEG43302.1
Oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; KEGG: ske:Sked_05210 putative dehydrogenase.
 
     0.793
AEG43272.1
KEGG: ske:Sked_05540 hypothetical protein.
  
     0.763
AEG43300.1
Oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: xce:Xcel_2657 oxidoreductase domain-containing protein.
 
     0.725
AEG45323.1
Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: xce:Xcel_2950 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.
  
 
 0.660
AEG43301.1
PFAM: Pectate lyase/Amb allergen; KEGG: nda:Ndas_5013 pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen.
 
     0.651
AEG45011.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ske:Sked_10100 carbohydrate ABC transporter membrane protein.
 
   0.562
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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