STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG43476.1KEGG: xce:Xcel_0659 hypothetical protein. (137 aa)    
Predicted Functional Partners:
AEG44742.1
PFAM: Metallophosphoesterase; KEGG: xce:Xcel_2227 metallophosphoesterase.
  
     0.578
AEG44155.1
KEGG: xce:Xcel_1426 hypothetical protein.
  
     0.535
AEG43111.1
Putative PAS/PAC sensor protein; TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; PAS fold-4; ATP-binding region, ATPase-like; KEGG: xce:Xcel_3140 protein serine/threonine phosphatase; SMART: Protein phosphatase 2C-related.
  
     0.481
AEG45226.1
PFAM: Transglycosylase-like; G5; Protein of unknown function DUF348; KEGG: xce:Xcel_2727 transglycosylase domain-containing protein.
  
     0.453
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.438
recB
Exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...]
  
     0.424
AEG45681.1
PFAM: Major facilitator superfamily MFS-1; KEGG: bcv:Bcav_4203 major facilitator superfamily MFS_1.
  
     0.420
AEG44568.1
SMART: Signal transduction response regulator, receiver region; KEGG: xce:Xcel_2007 response regulator receiver protein.
  
     0.415
AEG44499.1
KEGG: cfl:Cfla_1732 hypothetical protein.
  
     0.403
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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