STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG43538.1KEGG: xce:Xcel_0721 hypothetical protein. (123 aa)    
Predicted Functional Partners:
AEG43539.1
PFAM: Protein of unknown function DUF456; KEGG: xce:Xcel_0722 hypothetical protein.
 
     0.774
AEG45150.1
PFAM: Protein of unknown function DUF2505; Polyketide cyclase/dehydrase; KEGG: xce:Xcel_2610 hypothetical protein.
  
     0.640
AEG43540.1
KEGG: cmi:CMM_1679 hypothetical protein.
       0.611
AEG43541.1
PFAM: GCN5-related N-acetyltransferase; KEGG: nca:Noca_0429 GCN5-related N-acetyltransferase.
       0.611
AEG43134.1
Regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: xce:Xcel_3112 TetR family transcriptional regulator.
  
     0.568
AEG44186.1
PFAM: Protein of unknown function DUF457, transmembrane; KEGG: xce:Xcel_1445 membrane-bound metal-dependent hydrolase.
  
     0.477
AEG43637.1
PFAM: UspA; KEGG: xce:Xcel_0905 UspA domain-containing protein.
  
     0.447
AEG43537.1
KEGG: xce:Xcel_0718 sulfite reductase (ferredoxin); PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
     0.423
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.