STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG43649.1PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: psa:PST_1474 chemotaxis protein MotB-related protein. (277 aa)    
Predicted Functional Partners:
AEG43650.1
KEGG: vcj:VCD_002606 hypothetical protein.
 
  
 0.951
AEG43647.1
SNF2-related protein; KEGG: psa:PST_1480 helicase, putative; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal.
 
     0.873
AEG43648.1
KEGG: pap:PSPA7_6040 hypothetical protein.
       0.791
AEG43579.1
Regulatory protein LacI; PFAM: HTH transcriptional regulator, LacI; KEGG: xce:Xcel_3445 hypothetical protein.
  
  
 0.776
AEG43652.1
KEGG: aai:AARI_15500 hypothetical protein.
   
   0.579
AEG44404.1
KEGG: xce:Xcel_1669 preprotein translocase subunit YajC; TIGRFAM: YajC; PFAM: YajC.
    
 
 0.500
AEG45111.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
   
   0.473
AEG45062.1
KEGG: xce:Xcel_2500 hypothetical protein.
  
  
 0.470
AEG44790.1
KEGG: xce:Xcel_2251 hypothetical protein.
  
  
 0.467
AEG43651.1
KEGG: cmi:CMM_0491 hypothetical protein.
       0.462
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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