STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG43672.1Helix-turn-helix domain protein; KEGG: xce:Xcel_0924 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3. (510 aa)    
Predicted Functional Partners:
AEG43671.1
TIGRFAM: Isocitrate lyase; KEGG: mts:MTES_2434 isocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase.
 
   
 0.767
AEG43670.1
TIGRFAM: Malate synthase A; KEGG: xce:Xcel_0922 malate synthase A; PFAM: Malate synthase-like, core; Belongs to the malate synthase family.
 
   
 0.678
AEG44972.1
KEGG: xce:Xcel_2427 hydrolase of the alpha/beta superfamily-like protein.
  
     0.593
AEG45039.1
KEGG: xce:Xcel_2478 2-methylcitrate dehydratase; PFAM: MmgE/PrpD.
  
  
 0.476
AEG44346.1
KEGG: cfl:Cfla_3421 HipA N-terminal domain protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal.
  
 
 0.422
AEG43673.1
Hypothetical protein.
       0.416
AEG44194.1
KEGG: xce:Xcel_1475 hypothetical protein.
  
     0.406
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.