STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG43727.1KEGG: xce:Xcel_0974 hypothetical protein. (298 aa)    
Predicted Functional Partners:
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
 
     0.847
AEG43729.1
TIGRFAM: Succinyl-diaminopimelate desuccinylase; KEGG: xce:Xcel_0976 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation.
 
     0.754
AEG44934.1
KEGG: xce:Xcel_2407 hypothetical protein.
  
     0.613
AEG44194.1
KEGG: xce:Xcel_1475 hypothetical protein.
  
     0.607
AEG44538.1
KEGG: xce:Xcel_1931 hypothetical protein.
  
     0.594
AEG45345.1
KEGG: xce:Xcel_2975 hypothetical protein.
  
     0.584
AEG45206.1
PFAM: Septum formation initiator; KEGG: xce:Xcel_2681 septum formation initiator.
  
     0.575
AEG44052.1
KEGG: xce:Xcel_1277 hypothetical protein.
  
     0.562
AEG44499.1
KEGG: cfl:Cfla_1732 hypothetical protein.
  
     0.537
AEG45150.1
PFAM: Protein of unknown function DUF2505; Polyketide cyclase/dehydrase; KEGG: xce:Xcel_2610 hypothetical protein.
  
     0.521
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.