STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG44691.1PFAM: Protein of unknown function DUF1338; KEGG: rha:RHA1_ro00341 hypothetical protein. (479 aa)    
Predicted Functional Partners:
AEG44690.1
KEGG: mva:Mvan_1643 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
    0.892
AEG44692.1
PFAM: FAD dependent oxidoreductase; KEGG: sen:SACE_3881 sarcosine oxidase subunit beta.
 
     0.786
AEG44689.1
KEGG: svi:Svir_21700 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter.
       0.545
AEG44688.1
KEGG: xce:Xcel_2165 TIM-barrel protein, nifR3 family; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase.
       0.482
AEG44693.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rop:ROP_04850 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.413
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.