STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG44748.1PFAM: Peptidase M24, structural domain; KEGG: xce:Xcel_2238 peptidase M24. (381 aa)    
Predicted Functional Partners:
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
 
    0.794
AEG44747.1
KEGG: xce:Xcel_2233 DNA polymerase LigD, polymerase domain-containing protein; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain; DNA polymerase LigD, ligase region; PFAM: ATP dependent DNA ligase, central; DNA primase, small subunit; ATP dependent DNA ligase, C-terminal.
  
  
 0.762
AEG44512.1
IMP dehydrogenase family protein; SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase related 1; KEGG: xce:Xcel_1899 IMP dehydrogenase family protein; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core.
   
   0.632
AEG44746.1
PFAM: Glutaredoxin; KEGG: mlu:Mlut_22520 glutaredoxin-like protein.
  
    0.548
AEG44745.1
KEGG: apn:Asphe3_12530 hypothetical protein.
       0.533
AEG43004.1
KEGG: ske:Sked_16890 hypothetical protein.
  
     0.481
AEG43848.1
TIGRFAM: Peptidase M1, aminopeptidase N actinomycete-type; KEGG: ske:Sked_24580 aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal.
  
 
 0.435
AEG45374.1
TIGRFAM: LPPG:Fo 2-phospho-L-lactate transferase; HAMAP: LPPG:FO 2-phospho-L-lactate transferase; KEGG: xce:Xcel_3009 LPPG domain-containing protein containing protein; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052.
  
  
 0.418
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 
 0.404
AEG43433.1
KEGG: xce:Xcel_0616 hypothetical protein.
 
   
 0.403
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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