STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG44895.1PFAM: Xylose isomerase, TIM barrel domain; KEGG: svi:Svir_11130 xylose isomerase-like enzyme. (396 aa)    
Predicted Functional Partners:
AEG44896.1
PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: svi:Svir_11140 AP superfamily protein.
 
     0.956
AEG44894.1
PFAM: Deoxyribonuclease, TatD-related; KEGG: svi:Svir_11120 putative metal-dependent hydrolase with TIM-barrel fold protein.
 
    0.949
AEG44891.1
PFAM: UbiA prenyltransferase; KEGG: nda:Ndas_2325 UbiA prenyltransferase.
 
     0.948
AEG44893.1
KEGG: sen:SACE_2995 sugar phosphate isomerases/epimerases.
 
     0.948
AEG44892.1
PFAM: Xylose isomerase, TIM barrel domain; KEGG: nda:Ndas_2326 xylose isomerase.
 
     0.942
AEG44890.1
KEGG: mil:ML5_5774 myo-inositol-1-phosphate synthase; PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH-like.
 
     0.929
AEG42878.1
PKD domain containing protein; KEGG: svi:Svir_11080 glucose/sorbosone dehydrogenase; PFAM: PKD; Carbohydrate binding domain, family 6; SMART: PKD.
 
     0.785
AEG43914.1
KEGG: sgr:SGR_924 hypothetical protein; PFAM: Protein of unknown function DUF1080; Carbohydrate binding domain, family 6; PKD; SMART: Cellulose binding, type IV; PKD.
 
   
 0.780
AEG45248.1
Carbohydrate binding family 6; KEGG: sgr:SGR_924 hypothetical protein; PFAM: Carbohydrate binding domain, family 6; PKD; SMART: PKD; Cellulose binding, type IV.
 
     0.779
AEG44915.1
PKD domain containing protein; KEGG: svi:Svir_12340 glucose/sorbosone dehydrogenase; PFAM: PKD; Carbohydrate binding domain, family 6; SMART: PKD; Cellulose binding, type IV.
 
   
 0.775
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.