STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG45013.1PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ske:Sked_10080 sugar ABC transporter periplasmic protein. (555 aa)    
Predicted Functional Partners:
AEG45012.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ske:Sked_10090 polysaccharide ABC transporter permease.
 
  0.996
AEG45011.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ske:Sked_10100 carbohydrate ABC transporter membrane protein.
 
  0.992
AEG43256.1
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: bcv:Bcav_3323 extracellular solute-binding protein family 1.
  
  
  0.961
AEG43255.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bcv:Bcav_3324 binding-protein-dependent transport systems inner membrane component.
 
  0.939
AEG43254.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bcv:Bcav_3325 binding-protein-dependent transport systems inner membrane component.
 
  0.925
AEG44851.1
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: art:Arth_0426 extracellular solute-binding protein.
     
  0.900
AEG44852.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_0427 binding-protein-dependent transport systems inner membrane component.
 
  0.897
AEG44853.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bfa:Bfae_17870 ABC-type polysaccharide transporter permease.
 
  0.869
AEG45014.1
Beta-glucosidase; KEGG: xce:Xcel_1195 beta-glucosidase; PFAM: Glycoside hydrolase, family 3, C-terminal; Glycoside hydrolase, family 3, N-terminal.
 
     0.727
AEG45010.1
KEGG: cfl:Cfla_1083 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI.
  
     0.666
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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