STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG45065.1PFAM: Peptidoglycan-binding lysin domain; KEGG: xce:Xcel_2503 hypothetical protein. (268 aa)    
Predicted Functional Partners:
AEG45064.1
KEGG: xce:Xcel_2502 hypothetical protein.
 
     0.915
AEG45066.1
KEGG: xce:Xcel_2504 TonB family protein.
 
     0.879
AEG45061.1
KEGG: xce:Xcel_2499 hypothetical protein.
  
     0.773
AEG45062.1
KEGG: xce:Xcel_2500 hypothetical protein.
 
     0.772
AEG43784.1
PFAM: Type II secretion system F domain; KEGG: xce:Xcel_1032 type II secretion system protein.
  
     0.767
AEG43785.1
PFAM: Type II secretion system F domain; KEGG: xce:Xcel_1031 type II secretion system protein.
  
     0.748
AEG43788.1
KEGG: xce:Xcel_1028 TadE family protein.
  
     0.746
AEG45063.1
PFAM: Prophage CP4-57 regulatory; KEGG: xce:Xcel_2501 prophage CP4-57 regulatory.
  
     0.708
AEG43787.1
TadE family protein; PFAM: TadE-like; KEGG: xce:Xcel_1029 TadE family protein.
 
     0.707
AEG43786.1
KEGG: xce:Xcel_1030 hypothetical protein.
  
     0.683
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.