STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG45177.1KEGG: xce:Xcel_2234 putative ECF subfamily RNA polymerase sigma-24 subunit. (240 aa)    
Predicted Functional Partners:
AEG44425.1
PFAM: YCII-related; KEGG: gbr:Gbro_4352 YCII-like protein.
 
     0.828
AEG45632.1
PFAM: YCII-related; KEGG: sma:SAV_960 hypothetical protein.
 
     0.605
AEG45179.1
Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: xce:Xcel_2637 hypothetical protein.
  
    0.552
AEG45178.1
KEGG: xce:Xcel_2636 threonine dehydratase; TIGRFAM: Threonine dehydratase II; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Amino acid-binding ACT.
       0.539
AEG45180.1
PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: xce:Xcel_2638 cystathionine gamma-synthase.
       0.447
AEG44370.1
KEGG: cwo:Cwoe_4748 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2.
  
   
 0.445
AEG45181.1
Maltose alpha-D-glucosyltransferase; PFAM: Glycosyl hydrolase, family 13, catalytic region; KEGG: ica:Intca_0450 alpha amylase catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region.
       0.444
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.