STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG45234.1PFAM: Glycosyl transferase, family 39; KEGG: xce:Xcel_2736 glycosyl transferase family 39. (556 aa)    
Predicted Functional Partners:
AEG42823.1
PFAM: Protein of unknown function DUF721; KEGG: xce:Xcel_0005 hypothetical protein.
  
     0.697
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.681
AEG43355.1
ResB family protein; PFAM: ResB-like; KEGG: xce:Xcel_0446 ResB family protein.
  
     0.622
AEG44065.1
PFAM: Protein of unknown function YGGT; KEGG: xce:Xcel_1290 hypothetical protein.
  
     0.536
AEG44305.1
Dolichyl-phosphate beta-D-mannosyltransferase; KEGG: ske:Sked_18470 glycosyl transferase; PFAM: Glycosyl transferase, family 2.
  
 
 
 0.532
AEG43805.1
KEGG: xce:Xcel_1050 hypothetical protein.
  
     0.519
AEG45073.1
PFAM: Lipoprotein LpqB, beta-propeller domain, C-terminal; Lipoprotein LpqB, GerMN domain; KEGG: xce:Xcel_2512 hypothetical protein.
  
     0.462
AEG43060.1
PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; Copper resistance D; KEGG: xce:Xcel_3220 copper resistance D domain-containing protein.
 
     0.461
AEG42820.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
     0.451
AEG44529.1
KEGG: xce:Xcel_1921 hypothetical protein.
  
     0.443
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.